YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28925201, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEGISPADE AEARALEQAR IRKERREAKI RANAGNRLNK ITGLGGGVER DPPPTQPASS  60
   61 SSSNDDKTLP VPTSSSAPRV HADPEEVDIS TSEHFYQPNT TPRIPKLPQP TQGPSPFDPN 120
  121 DLSEESLRQM MLGRESPMVP GAAGGDPFAS LLGAGPGGQG GPGAEDPMMQ MMLDMLGGGG 180
  181 APGSGAGGMP PFPGGGFPGM PGMGGMMPPG MGMGQPGVPP AMAVPDRYSS LWRLLHTAVA 240
  241 LGLGLYIALW TSFSGSKVDR DSKNILTGNK HHHVGAGDQV AVGFDTDSAR RFFYVFATAE 300
  301 ALLLTTRFFL EKGLAKSPVG GAFGGGMLGM AVGFLPQPWK GYLEIAMRYG QILSTVKADI 360
  361 LVCIFVLGVC SWWRS

Type	Start	End	Confidence
Cytoplasmic	1	174	0.87
Transmembrane Helix	175	197	0.62
Non-Cytoplasmic	198	198	0.36
Transmembrane Helix	199	218	0.47
Cytoplasmic	219	230	0.49
Transmembrane Helix	231	253	0.86
Non-Cytoplasmic	254	291	0.57
Transmembrane Helix	292	310	0.60
Cytoplasmic	311	316	0.74
Transmembrane Helix	317	337	0.89
Non-Cytoplasmic	338	352	0.76
Transmembrane Helix	353	373	0.90
Cytoplasmic	374	375	0.79