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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|85098745
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.53
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPGMAPMGG GGNIKVVVRC RPFNAREHDR GAQCIVEMRD NQTVLTTPPD AVVKGGKDQG  60
   61 QKIFAFDRSY WSFDKNAPNY AGQDQLHEDL GKPLLDNAFQ GYNNCIFAYG QTGSGKSYSM 120
  121 MGYGKDAGII PMICQDMFKR INDMQQDKNL RCTVEVSYLE IYNERVRDLL NPANKGNLKV 180
  181 REHPSTGPYV EDLAKLVVGS FQEIEHLMDE GNKARTVAAT NMNETSSRSH AVFTLMLTQK 240
  241 RFDPETKMEM EKAAKISLVD LAGSERATST GATGARLKEG AEINRSLSTL GRVIAALADL 300
  301 STGKKKKGSA AGQVPYRDSV LTWLLKDSLG GNSMTAMIAA ISPADINYDE TLSTLRYADS 360
  361 AKRIKNHAVV NEDANARMIR ELKEELAQLR SKLGNGGVVG DTHVPGEEVY AEGTPLEKQI 420
  421 VSITTPDGTV KKVSKAEIAE QLNQSEKLLQ DLNQTWEQKL QKTEEIHKER EAALEELGIS 480
  481 IEKGFIGMST PKKMPHLVNL SDDPLLAECL VYNLKPGSTS VGNVESNAEH QANIRLNGSR 540
  541 ILHEHCVFEN AADGTVTVIP KEGAAVMVNG KRVTEPTRLH SGYRIILGDF HIFRFNHPLE 600
  601 AKAERAERAE QQSLLRQSLT ANQLQALEKS PNLSPSHNHQ QSLSTAVSEG DSSRPDSPAP 660
  661 FSRNTKESDW SFARREAAGA ILGTDQNFAK LTDEELNALF EDVQRARAER VNVREGDEDI 720
  721 ESMASYPTRE KYLSTGTLDN FSLDTALTMP STPKQAETEE KLGQIRDVMQ GQLDKQKEEY 780
  781 KDQLKTAEAA NVEVEEIKKE KARMEETLMQ LKVDMQKQLE MQRRQFEDKI EKLDPLKRPK 840
  841 ANPKLSADEI ERAKAVVKKW RSRRYVLMAE AVLQHAATLK EAQVMSHELN ESVVFQFTIV 900
  901 DVGHLLCSSY DMVLNGLTGE GDDIALETAL KPCVGIRVID YKHSVVHLWS IEKLHDRVRQ 960
  961 MRQMFQYLDQ PEYAQHLSLD NPFVETCMPQ YTLVGEVDVP LKTVFESRVQ DFTLDVTSPH1020
 1021 TSHAIGMIKL ALEPSSARAP TNTLKFNVVM HEMIGFAERE GTEVHAQLFI PGISEEDGIT1080
 1081 TTQMIRDFDE GPIRFESVHS MSIPLFASQD TSLRVAIFAK VSAMHLDKLL SWDDMRDAVP1140
 1141 TSHSKPKGAR INESHFYTEG KHDLLARVQI LELNEEGDYV PVEVTQTSEL DNGTFQLHQG1200
 1201 LQRRVAITVT HSSGDALPWN DATSLRVGKI ALLDSAGKTP DMGSASPPLP LRLVTEPTFR1260
 1261 VNANGTRSVT LIGQWDSSLH NSLLLDRITS EKYRVQMTVS WEINSEKLAE PIKFSLPVAV1320
 1321 QVVSRNFVRQ TSMFSSLWQN IRIVHSSTGI FTVQMRPAPI KRVGDLWRMS SQHDYVKGEE1380
 1381 NLGTWTPRGV SLVADYISAR KKKRMMTELT AVQGRLKKLG FGDANDLSNG VDDTGDDSDL1440
 1441 PPPKTNSETD SIAELLQDDP PEVPELPTPQ EGPSPEDEVA PRAETEQEEQ TNSAELNQPT1500
 1501 DSTKSPPEYT DAQTYLLNRC LKLWQRYPDP TAKILSPANT DPPTDGYADS ISDQKSTLEF1560
 1561 VASVIRVPKN PTVLKGGYLL VPNSDATKWN KRFVELRRPY LHIHSVADGE EVGIVSLRNS1620
 1621 RVDSQPGILG LLNDDYDTGG SGGFGGSDDG YGLLDNLNGN MDNNNRAANG RPSGLLDTIM1680
 1681 SGGSGGSGGR VSNSNISTPQ QRRSPSALLI SSLWPTFSPL PSPNPMTAAG ARSSHSRLAS1740
 1741 GGNRTSAVSL RSNTSSPASS TGTLAATTTT NNNNGPLSSS GPSLQQGGGL SRLSERLQAG1800
 1801 VFAIYGTDNT WLFAARSEKD KMDWIWKIDQ SYMMTSPSAS VAGSRGGSRA GSARGSRAVS1860
 1861 PSPGARRTSA RVLLLIFSLF SSSSLSSSLS SSSSLSSSSS SLSSSSSSSS SLSSSSLSSS1920
 1921 SLFSSSLSSS SLSSSSLSSS FLLSSSLLSS LLLFLSSIIS IT

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