YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28922217, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADYIGGNIE ADHLCVLVHG LWGNPNHMAS VAKALRAQYP RDKLNILVAK RNAGSFTYDG  60
   61 IELGGERVCN EIEEELQAVE SKGGKIKKIS IAGYSLGGLV ARYAIGLLYA RGVLDNLECM 120
  121 TFTAFASPFL GVRTPLRGWP NHVWNVLGAR TLCMSGRQLF GIDHFRDTGK PLLAVLADPK 180
  181 SIFMCGLAKF KRRILYTNIV NDRSAVYYTT GIAKTDPYTD LDKVKVNYVK GYEPVILDPT 240
  241 NPVSPAPPKP KEPLVANLKK WINRVPFILA VAVFVPLGLV AFFINSAVQT VRSSKRVKLH 300
  301 EKGLAGIDVE SYRVDLWIKE MREAVEHAYE DLNSSQNQEY LGLSDGDLDE ETDDSSNQEI 360
  361 LALERKQSHP HQPTLALAPY QFAAINALDA LGWRKYPVWI HNDRHSHAAI IVRMEKPTFE 420
  421 EGKVVLSHWV NEEFLI

Type	Start	End	Confidence
Cytoplasmic	1	264	0.75
Transmembrane Helix	265	284	0.93
Non-Cytoplasmic	285	436	0.83