YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46908753, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.87
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSLYSRIVV TMLVVIISSS LLGFFFANIY YQIKLKPFND EKTAKIAEEV QQFYESNATI  60
   61 SLNEYLENVG ELGYELYLTD GAEKSTYYGG AFRKKDLPDK TIKQVLDGET YHGIDSFDTG 120
  121 IFITGFFDND VRNTIGVPVQ ADGKQLALFI RQDPEKQFGE LRIFFAMILI FTSIISILLV 180
  181 LISGRYIVKP VVKLTNATKK IRKGNYDVAF EVRRKDEIGQ LADSFTKMAS ELKKSEASRQ 240
  241 EFVANVSHEL QSPLTSMQGF ARLLGSGTLT EKEQAEYLTV LSEETTRLSS LTKQLLTLAS 300
  301 LDQESELRKK EPVHLDEQWR QLIQMTEWSW REKELTINLD LADVNYTGDA ELLYQVWSNL 360
  361 LTNAIKFTPQ GGNIKVHLYE KATYVFVEVQ DSGVGIGKED MAKIFDRFYK ANESRTREEG 420
  421 SSGLGLSICQ KIITLHHGEI TVQSSPEKGT TFKVKLPKN

Type	Start	End	Confidence
Cytoplasmic	1	7	0.48
Transmembrane Helix	8	30	0.79
Non-Cytoplasmic	31	162	0.62
Transmembrane Helix	163	184	0.89
Cytoplasmic	185	459	0.59