YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|254878169
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	30	0.91
Transmembrane Helix	31	50	0.95
Non-Cytoplasmic	51	57	0.85
Transmembrane Helix	58	81	0.89
Cytoplasmic	82	104	0.87
Transmembrane Helix	105	127	0.87
Non-Cytoplasmic	128	133	0.80
Transmembrane Helix	134	154	0.89
Cytoplasmic	155	167	0.76
Transmembrane Helix	168	185	0.90
Non-Cytoplasmic	186	188	0.71
Transmembrane Helix	189	207	0.90
Cytoplasmic	208	284	0.96
Transmembrane Helix	285	304	0.92
Non-Cytoplasmic	305	308	0.68
Transmembrane Helix	309	329	0.89
Cytoplasmic	330	349	0.94
Transmembrane Helix	350	370	0.95
Non-Cytoplasmic	371	376	0.77
Transmembrane Helix	377	398	0.91
Cytoplasmic	399	405	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIFDSKALWK ERFSAYTTEV MRYLRYMFND HLLFVLVIGL GAGIFYYAGW VKTLEPTFPV  60
   61 IPLMVILLTA SIAISPVATL LKKPDIVYLI VQEKAMDSYF TQAKIASFFM QLYVFVIVLG 120
  121 VCMPMYVEVT KVPYSQFFTL FIVLSMLKVW NIYFGWESMK LEEADTTWMF IRVILNAILI 180
  181 YIALVAAPYI SIPLVLVVLV ASYYWLRTKT AKVTLRWEYL VDKEEARMNR FYRLVNLFTD 240
  241 VPHLRGTVRR RSYLDFLYQP IPYAKRKTFA YLFSRTFIRT NEYAGLYIRL TVIAVILLVF 300
  301 VQGFYLNIIF SLLFLYLTGF QFIPMLKHYD AQIMLRLYPI NDRYRHRSFI HFLRILLLAQ 360
  361 ALLFSVIGIA QNGTISGMII LGINLAFVVI FTFLYAPVRM KKMYE