YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|254879738
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQNKRLIILL ECAIFAAVAM VLSFIPLDIG SSFSISLGMI PMYVIAIRRG FWAAGFAGLL  60
   61 WGLLHFLTGK AYILMPSQAI IEYILAFSFI AFSGVFSKQV RSNLAANQLK KAIEWAWGTM 120
  121 IIGGVARYFW HYVAGVLFWG AYAFQGWGAQ LFSIVMNGAS CLGTVLVSGI IISILLKTSP 180
  181 KLFLPK

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.53
Transmembrane Helix	7	30	0.83
Cytoplasmic	31	49	0.46
Transmembrane Helix	50	69	0.87
Non-Cytoplasmic	70	78	0.61
Transmembrane Helix	79	97	0.89
Cytoplasmic	98	114	0.81
Transmembrane Helix	115	134	0.83
Non-Cytoplasmic	135	153	0.71
Transmembrane Helix	154	176	0.93
Cytoplasmic	177	186	0.91