YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46880325, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.60
Transmembrane Helix	8	28	0.90
Cytoplasmic	29	45	0.61
Transmembrane Helix	46	69	0.76
Non-Cytoplasmic	70	83	0.45
Transmembrane Helix	84	106	0.78
Cytoplasmic	107	112	0.43
Transmembrane Helix	113	128	0.85
Non-Cytoplasmic	129	135	0.60
Transmembrane Helix	136	157	0.78
Cytoplasmic	158	177	0.75
Transmembrane Helix	178	200	0.85
Non-Cytoplasmic	201	217	0.80
Transmembrane Helix	218	240	0.83
Cytoplasmic	241	248	0.78
Transmembrane Helix	249	273	0.87
Non-Cytoplasmic	274	291	0.79
Transmembrane Helix	292	312	0.81
Cytoplasmic	313	544	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDINIQQMI FQFIGGLGIF LFGIKYMGDG LQMAAGDRLR DILDKYTTNP FMGVLAGILV  60
   61 TVLIQSSSGT TVLTVGLVSA GFMTLKQAIG VIMGANIGTT VTAFIIGIKL SEYALPIIAA 120
  121 GAVLLFFFKN HKVKNIGQVF FGFGALFYGL DLMGQGMKPL AGMESFHELT AQMSTNPFLG 180
  181 LLIGTIFTAV VQSSSATIGI LQELYGQGAI DLQAALPVLF GDNIGTTITA VLAAIGASVA 240
  241 AKRAAATHVI FNLIGAIIFM LILPLFTSLV TYLQGLFGLN PEMTIAVAHG TFNITNTFIQ 300
  301 FWFIGAFAWL VTKLIPGDDS RIDYKTKHLD TNLIDQSPGI ALEMAREETL RMADYAKFGL 360
  361 QEARQYLVNR ESKHAESTIQ VEEAVNNLDR KITEYLTKIS SVALTNNETE EHALMLDTVR 420
  421 DIERVGDHME NIVENIDQLI KNKAKMSEEA SEQLTEMFEL TTANFERAVK SMHKKDRALA 480
  481 EETILVEKDI DKAERRLRKN HIRRLNEGKC QVVSGILYID IVSDLERIGD HANNIAESVL 540
  541 ELNE