YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46880037, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.83
Transmembrane Helix	20	40	0.91
Non-Cytoplasmic	41	114	0.80
Transmembrane Helix	115	137	0.87
Cytoplasmic	138	142	0.58
Transmembrane Helix	143	163	0.80
Non-Cytoplasmic	164	168	0.54
Transmembrane Helix	169	190	0.86
Cytoplasmic	191	196	0.60
Transmembrane Helix	197	213	0.76
Non-Cytoplasmic	214	217	0.73
Transmembrane Helix	218	234	0.95
Cytoplasmic	235	243	0.76
Transmembrane Helix	244	263	0.94
Non-Cytoplasmic	264	396	0.98
Transmembrane Helix	397	416	0.91
Cytoplasmic	417	427	0.82
Transmembrane Helix	428	449	0.95
Non-Cytoplasmic	450	460	0.86
Transmembrane Helix	461	482	0.92
Cytoplasmic	483	491	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIGKVKSISM WLWHHLTPQI FAVICVFIIT LIALFVPPYI GMADNGDFFR IFSSNGLFVN  60
   61 NTNYDALQFG HFVKEFGIYQ YFNENQVAIY SSQSIFIQMA LLLNKLFWST TVFDVRFLGG 120
  121 LQLALLLPAI YLLVAGLTAK MKGWPGYVVA ALTVFIFADT AYTAYFNSFF SEGLILIMML 180
  181 YISAGFLLLY QHKYNDYAML GLIFVASLIL ITAKQQNAPI AVVIAVCGIL VFFIRKNRAF 240
  241 RISAAATFFV IFLSGVVMYA FIPGEFVTIN QYQTMTRGVL LDSENPEKSL EEMGMNSEFA 300
  301 LLKGTNFYQK YKMIDLDSKL MEKEFYPNYN FVTVLSYYLE NPKQFGKMLD LSAQNSFSIR 360
  361 PFEMGNFEKA TGYKFKEKTH FFSIYSDVKE KFAPAKFTFL ILWALVFLIC YGVSAFKHFR 420
  421 EKNIRGMLLF DLVVLLIGSG FAVILVTIVG DGEADLTKHN FLFNVCFDLT MLIGAASLLE 480
  481 VYMKKRGERN A