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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|28922231, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.64
Topology Confidence: 0.46
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALFLSPPKL VLLAVHLAVK ADIDSLTSLA AHHGSVLRKE LLLRILLTYL PETLRSSDYV  60
   61 TLIEHIERGE FPESQLDSTE NEQKHEIDVS SVESLTEEEA IKKVKKLRLL PLSSPEAPST 120
  121 AEVAADDTTS LFLLRRSYKV DEEAGLLTEL PALLAPFLDH SPAIRWLLVS TIVPLLRRNC 180
  181 EYYPNEPIPY TLAAFQRLPE RTIANVLLSQ TGAREEDYGQ IGRDLKGMIA PWILDRKRWN 240
  241 NKDRESGSAE GLTPRGPDTN EDLCPGWNQV LRWLTSNASK NWRVAANAFD QWEGPQSVDF 300
  301 GGILGGGEEA QLNDEQRRHL DWTYAQAALA STYLISNASV EALEGAYAIL NRAVIVTNQD 360
  361 PLPPLQNAVG LLAPLAEQVD GIVASPKNAT YLRNDLLDSS NILTWPTETS TAFCQALIIS 420
  421 AFILTRAGSP CTLRRVGELA LLQDEREQKA EALKLIHSLA NQGPKTDDKF WMKARDEILW 480
  481 LRDWGAEDAW GATDSRPKGI FSQLKKEFLE VEFLKALLTN TRYALAKSIY EDSVERPLDE 540
  541 KVLKDAVFST AMTAYDNASN PNRTRGGLKK CDDIIKAFPN TISKSDPVAQ KIEALLQATH 600
  601 ALSEFRLVLK QGEPFTPVVL RVHADPISII DRILEQNPKS YTRLHDLLDI GAGMVKAGLT 660
  661 TTTKTPASKQ QHSSYTTATL SSEEEEKQRL TAERRITAMC IDAALTEDDF ETAYSYILNR 720
  721 LSSPPSSRNR SSTPSSVVIE DDYSWKAALQ AGKYRRTSRT VRPTHIGTNA SANPEIRHLE 780
  781 QRIECLSTAL RIAPTPTLQE ILNAFRRAEE ELDSALKAEE EAEDAWDAAG DSMHGHHGGG 840
  841 QRVPGAFGTP PGGGGGGTRQ HISATGIGSG GSSAAAAAAR SAKSSSSSNS RHQQLKHKQT 900
  901 EEAPMSLFDL SRASVLSAQK NLSALSSLQR VAGGLGGHLG GVAGGLSGSV GSLVGGFTSS 960
  961 SSSNTTTNAA GRNSLSSDRD RDMMRPGSRG STSTAGGGMT NSFYSDGTGT GGEEGNGGGG1020
 1021 QQGRVRKRDQ LREAAMGTLV SGVGWLVGAP APTQAQAQAH GGNGNNNGHR REE

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle