YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85102797
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDHEYYSQK PLPIPGQATS HQGGGASHYN QNYGQGQQPM PTSYSANFQS PFDTVFDDHV  60
   61 YPASSHQSGA SSSRQHLNSQ HYQDTASHGP TRVSSEEDMA YNHTTDDIPL EDRSGGRNKN 120
  121 NDPEMQDHVY DAAQPQQKKS RSGRVSVGQL GMLGSNAKRI PFVVYFFTTV QIAVFIAELV 180
  181 KNGMATGSPI MIKPQFNPFI GPSSYMLINM GARWDPCMHA IPGVQNATQL ISWPCPNTTT 240
  241 YDVNAPTMKC TLSDLCGFGG VPEPWYNATA TMESVPEPNQ WWRFITPMFL HAGVIHIGFN 300
  301 MLLQMTIGKE MERSIGSIRF FIVYVSAGIF GFVMGGNFAA NGMQTTGASG ALFGIIALLL 360
  361 LDLLYSWRDR KSPWKDLLFI GLDIVISFVL GLLPGLDNFA HIGGFLAGLA LGICVLQSPN 420
  421 ALRRRIGDEP PYSQVVDTNG FLRQGAPPSF FSNPVGFFKG RKPLWWAWWL VRAAFLTLTV 480
  481 VIFILLLNNF YVDHKECSWC KYLSCLPVKN WCEDGNLQIT TQDVTPNKRD LIFAADLEQL 540
  541 PRLQAYFA

Type	Start	End	Confidence
Cytoplasmic	1	161	0.65
Transmembrane Helix	162	180	0.62
Non-Cytoplasmic	181	283	0.95
Transmembrane Helix	284	303	0.88
Cytoplasmic	304	319	0.72
Transmembrane Helix	320	339	0.92
Non-Cytoplasmic	340	345	0.78
Transmembrane Helix	346	366	0.93
Cytoplasmic	367	375	0.84
Transmembrane Helix	376	394	0.94
Non-Cytoplasmic	395	399	0.75
Transmembrane Helix	400	419	0.88
Cytoplasmic	420	467	0.89
Transmembrane Helix	468	487	0.95
Non-Cytoplasmic	488	548	0.91