YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|38566805, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.82
Transmembrane Helix	7	24	0.94
Non-Cytoplasmic	25	30	0.76
Transmembrane Helix	31	52	0.87
Cytoplasmic	53	60	0.84
Transmembrane Helix	61	81	0.93
Non-Cytoplasmic	82	140	0.91
Transmembrane Helix	141	161	0.72
Cytoplasmic	162	172	0.66
Transmembrane Helix	173	193	0.95
Non-Cytoplasmic	194	202	0.66
Transmembrane Helix	203	225	0.87
Cytoplasmic	226	231	0.65
Transmembrane Helix	232	250	0.70
Non-Cytoplasmic	251	304	0.62
Transmembrane Helix	305	325	0.79
Cytoplasmic	326	362	0.83
Transmembrane Helix	363	385	0.83
Non-Cytoplasmic	386	406	0.87
Transmembrane Helix	407	426	0.80
Cytoplasmic	427	437	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWFISASTSA IFLLSIVLLI PIAFDVGGRD AGLAYSLSLF IFYLIYSTSK LLTPESSRVR  60
   61 WFFTSSVGLS QWIIIPALLI WSLNRFSVDA ENAGWVSRTF SSATANHKPS TWGEYFFGQH 120
  121 GFVENVALGA WDKTLSYSSP VFQLLEGFCT LLVIQTAGRV ARWLVTRGGG DTWMIFLLAF 180
  181 SGSIISSAVY FLWRVAHFPE INTIDATLIG ATMTSAVFLG AYGIGSGRGN AVESSLLFAY 240
  241 IVLCVYQIFT DYQPSAEAAA AAEQAASLQP DFPPLPPIIM ASYSTLMHIL SSLPEAFNTS 300
  301 FQFLYAAFQT ITPSVIISLT YRIIVFYCAT RIIPAVRELG ARALMDEPSL LEETDGANRL 360
  361 VGFLSWFSPS ILIAVYTSLL LQHFSVSNNG DDIGWTLRAG DAGGNPWRWV NVAATMGLYA 420
  421 VELYLGERNE GMHWRAD