YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|229113482, gi...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.78
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKQKHVTLG VTGMTCAACA TRIEKVLNKM DGVDANVNLA MEKASIKYDP SQQEISNIKN  60
   61 KIENLGYNVA EEKITLDIEG MTCAACATRI EKVLNKMEGV SNATVNLATN SAVVEYNEGL 120
  121 ISTENILEKI KKTGYKGQIR SEDVDRSERK EEVIKAKKRQ LIISIILSLP LLYTMIGHMP 180
  181 FDTGIPMPHI LMNPWFQLLL ATPVQFYIGG HFYVGAYRAL RNKSANMDVL VALGTSAAYF 240
  241 YSLYEALKTL GNANYSPDLY FETSAVLITL ILVGKYFETL AKGRTTEAIS KLLSLQAKDA 300
  301 LVVRDGQEIR VPLEEVVIGD TIIVKPGEKI PVDGIVTSGV SSVDESMITG ESIPVDKKEG 360
  361 DAVIGATINA NGVLTIKAEK VGKDTALAGI IKIVEEAQGS KAPIQRLADI ISGIFVPIVV 420
  421 AIAVVAFIVW YFFITPGDLP NALEVGIAIL VIACPCALGL ATPTSIMVGT GKGAEKGILF 480
  481 KGGEFLEGTH KINAVLLDKT GTVTKGKPEV TDVLEFEEGM LDYAISAESA SEHPLAHAIV 540
  541 EYGKQQGINL KDLAQFSAIP GHGIEANIED KKVLVGTRKL MNEQSIEISQ HEEVMKDLEY 600
  601 QGKTAMLVAI DGKLAGIIAV ADTVKESSKA AIQTLKEIGI EVYMVTGDNK RTADAIAKLV 660
  661 DLDHVYAEVL PEDKAKIVED LQKQGKRVAM VGDGINDAPA LAKADIGMAI GTGADVAIET 720
  721 ADVTLVGGDL SHIPKAIELS RKTMKNIRQN LFWALFYNAI GIPVAAAGLL EPWVAGAAMA 780
  781 FSSVSVVTNA LRLKRVKI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle