YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28922165, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDSTFLTSL SHVFGWTYFT CWSLSFYPQS ILNFSRKSTS GTTIDFPLIN SLAGFFAYTI  60
   61 SNIAFAYSPL IRAQYAVRYK GLTPTVQLND ITFAFHGLIL CFVTVSQYLF PRAWGFAPSL 120
  121 GSRPSRFILG TFFGCVAGAL IIIFRVWASP VRNDTSGAAV TEGGWVWLDA IYAVSYVKLV 180
  181 VTLIKYTPQV IVNYRNRSTE GWSILQILLD FGGGILSIAQ QAIDSYQQGD WSGITGNPVK 240
  241 FALGNVSMIY DLVFIMQHYV LYRHAAGAKA DGAEGDSDLD PLLREDVRGG GDEERRIQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.67
Transmembrane Helix	12	31	0.78
Cytoplasmic	32	45	0.74
Transmembrane Helix	46	67	0.85
Non-Cytoplasmic	68	91	0.82
Transmembrane Helix	92	111	0.93
Cytoplasmic	112	126	0.80
Transmembrane Helix	127	148	0.94
Non-Cytoplasmic	149	164	0.83
Transmembrane Helix	165	184	0.79
Cytoplasmic	185	201	0.82
Transmembrane Helix	202	223	0.82
Non-Cytoplasmic	224	240	0.85
Transmembrane Helix	241	261	0.73
Cytoplasmic	262	298	0.85