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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|16944479, gi|...
Protein type: Globular with Signal Peptide
Type Confidence: 0.98
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSTPSGGGS VAVAAAGTSS NNASARASPT VTSHSSNGKS KTAPVNSNGY HPPKSQIPLS  60
   61 FMKSEPLDLN SVERRGQPTA CKEPSKKKNR PHGLEEAPSY CPTEEEWKEP FEYIRKITPE 120
  121 ASKFGICKII PPESWNPDFA IDTERFHFRT RKQELNSIEG SSRANINYID ALQKFHRQHG 180
  181 NNLTRLPYVD KKPLDLFRLK KAVEARGGFD KVCKLKKWAE IGRDLGYSGK IMSSLSTSLK 240
  241 NSYQKWLCPY EDYLRVAKPG VHQQLELEYG GPLTPSPAPS PMKRSNAQTP SDLRGESPSR 300
  301 HPTEAAVNGH AKDSDRDVTM TDAPSVPAPP VKSGFTAINT GGFTAINSGF TSINRPLAPA 360
  361 SEAITPLSSA KNTPEVRPSA AGSSSLKRQL SFDSTSDSAK KESSVDKDDG EAGSRRSKRL 420
  421 KKDSVPTVAG SHMSLFRPSA PRIPREDSSS GENCEQCGKG SEEGSCMLVC ESCDNHYHGS 480
  481 CLDPPLKTKP ENEWNCPRCL VGDGQFGFEE GGLYSLKQFQ EKAADFKQGY FENKMPFDAV 540
  541 LNCHRPVTED DVEREFWRLV ADLEETVEVE YGADIHCTTH GSGFPTVEKN PNNPYSTDPW 600
  601 NLNLLPLHPE SLFRYIKTDI SGMTVPWVYV GMIFSTFCWH NEDHYAYSAN YQHFGATKTW 660
  661 YGIPGEDAEK FEAAMREAVP ELFETQPDLL FQLVTLLTPE QLKKAGVRVY ALDQRAGQFV 720
  721 ITFPKAYHAG FNHGFNFNEA VNFAPSDWEP FGHAGVERLQ TFRRQPCFSH DELLWAAADG 780
  781 ITGTGLTIQT AKWLAPALDR IHQREMVQRR EFIGKHDFIA THLDAKHPSP HHLCVFNGET 840
  841 NEKCPIQFAI NDVDVPEDEY ACFYCKAYTY LSRFVCLKTG MVLCLLHAGS HKCCDAQESD 900
  901 RFLGKEHALY YRKSDEVMAS TLKRVTDKAS VPETWEEKYQ RLLDDEAKPS LKALRNLLSE 960
  961 GEKIPYELPS LSTLKLFVDR CNHWVEEATN YTIRKQQNRR KSEKAWPVGV RKSVGNAEHD1020
 1021 QKEREMRNVA NIHRLLDEAE MIGFDCPEIQ QLRERAEAIK AFQETAKKVL DLPRDLQPIG1080
 1081 SIEELLEEGQ NFNVDIPEVE KLYSALERLR WDEKARESRS KFMTLDEAQE LVDEGKRLGI1140
 1141 QIYEDNIKYL EEKLEKGREW EKKARELINA DVVNYSQLDS LSVQAQHANL PISKGTLDMV1200
 1201 DAILYKQREA QRQIIDLNKR SADPDYTQRP KYNEVAEVMR KVEELQAKPP GTLDLEKEQK1260
 1261 RHEDWMRKGK KLFGKSNAPL HILKSHMDYV LDRNKWCFNT VEDTPRSPAE PASREPSVDG1320
 1321 EHDSSDNEDE NGSRQVFCIC RRVEAGMMIE CEQCHEWYHG KCLKIARGKV KEDDKYTCPI1380
 1381 CDWRVKIPRD ASRPKLEDLI AWYEEIPNLP FRPEEEGVLK DIIDMAERFR KHISPLCSGF1440
 1441 STAADAENQR FYLRKIEGAE ILLAYETNYL RQELHKWNPV APEPPPILEQ SKSTRKPRPT1500
 1501 KLQKLLQQHG VQDPDDLPED VRGRANSLKR KAQNAEAHAG GLGTGPGMHP FGPSHTYFSR1560
 1561 QSSAQPQTPG LPMTNSSHAH PSRGPDSVSP SNTLNGRTGS LSHHSPLHHS RYFNGDNSTS1620
 1621 GQALSIEDRI LRDHHDNDDH ADANRAKFRD SIWGSASSAT KRSSASALVT ENDPMGIGPP1680
 1681 ADEGVADNHM FIDLVHDDDE EDERRGAAAS ASADLVADHH HHRHEMETDH DHLLEV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle