YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28923115, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.98
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLSIVTTLL ASTAVHAFSD SSPFVLFSTS RLNTPERYDQ LQTSNQVIAS AKEILSSCPT  60
   61 KDYVIVSQPN VHAADIRDGS HCKMRSLCDT IASKEIKGRF SVAEVVGDLS THSLEDYVKE 120
  121 ACAAKGKVAG IVKVDLTHLP SLEHKDNRAQ ILASNDDQLG LVLDTLEGDY TLVMVSDPNE 180
  181 FKAYQPDFIE PVHMDLKRGQ FSSQEGSDNG NTTYDNRPLF AKYQFFTPGI FVALLALIVM 240
  241 LSILGVGLKA LGSLEVSYGA FDKEMGPTAQ KKQQ

Type	Start	End	Confidence
Signal Peptide	1	17	0.99
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	225	0.99
Transmembrane Helix	226	248	0.88
Cytoplasmic	249	274	0.93