YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18376252, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPRRRRGGR DGSQDGNSSE TDAPKNRPPN TAFRQQRMRA WQCVLTPKLI VSIFTVLAAI  60
   61 YLGFGAYLTY LAFTVRDISI DYTDCLRDAP RGNDTRKPIP PDNIKSHFTS KALADHPNLD 120
  121 PKKMSTWHVE EKNVTFEWSG ITAPRNICVI SFPIPEELPA PVSFYYHLDN FYQNHRRYVN 180
  181 SFNAKQLLGD AVSKDVIDGS TCKPLDLDPR GSGKVIYPCG VVANSMFNDT FSNPYNEQNS 240
  241 TDYVMSNKAG DISWEGLKDL YGETKYSRAD IVPPPNWEAA WPNGYTNDTK LPDLKNWADF 300
  301 QNWMMLAASP DFYKLVRKNE RDAMKAGNYR IEIVDNFNTT VYNGHKSIVL TTITAMGARN 360
  361 IWPGIIFLIV GGICLILDIY FVLSFFIWKP RKLGDPSYLS WNQPSAAQAG ST

Type	Start	End	Confidence
Cytoplasmic	1	43	0.89
Transmembrane Helix	44	70	0.81
Non-Cytoplasmic	71	360	0.90
Transmembrane Helix	361	383	0.90
Cytoplasmic	384	412	0.83