YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46445762, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.93
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEKEPTTTN QDFSSLNLDL LNKKKRNKVL LKIFFVFLLL TILTTIYWYL FIRFHESTDD  60
   61 AYVNGNIVNL MSPEQGTITA IYADNTDFVK QGQLLIELDP TLYQLAFEQA QVELALAVRE 120
  121 VQQLYETVQQ KKAALELKQA DLKRAQEDFE SRNSLRNTEA ISIEDLNHAQ ANLTVAQAAT 180
  181 NLSKHELNSA IAAIGSTSLE NHPNIQNKEI ALKQTYVNLK RCKILAPVSG FISQRKIQVG 240
  241 EWVSTTRSLL SIIPLDQIWI DANFKETELR DIRIGQPVTV KSDMYGSSVL YHGKVLGVLA 300
  301 GTGSVFSLIP PQNATGNWIK IVQRVPVRIS LDSNELRQFP LFLGLSTYVV VDTKNQLGDR 360
  361 LASNPVYNPI LTTSVYEIPM QPAQELIDSI IQANLNHKS

Type	Start	End	Confidence
Cytoplasmic	1	29	0.98
Transmembrane Helix	30	51	0.93
Non-Cytoplasmic	52	399	0.99