YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|32412156, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	35	0.97
Transmembrane Helix	36	58	0.93
Cytoplasmic	59	66	0.83
Transmembrane Helix	67	87	0.94
Non-Cytoplasmic	88	126	0.91
Transmembrane Helix	127	147	0.91
Cytoplasmic	148	153	0.85
Transmembrane Helix	154	174	0.90
Non-Cytoplasmic	175	190	0.87
Transmembrane Helix	191	211	0.91
Cytoplasmic	212	227	0.91
Transmembrane Helix	228	247	0.91
Non-Cytoplasmic	248	256	0.72
Transmembrane Helix	257	280	0.91
Cytoplasmic	281	287	0.94
Transmembrane Helix	288	309	0.92
Non-Cytoplasmic	310	315	0.74
Transmembrane Helix	316	336	0.89
Cytoplasmic	337	344	0.91
Transmembrane Helix	345	370	0.78
Non-Cytoplasmic	371	401	0.82
Transmembrane Helix	402	421	0.92
Cytoplasmic	422	481	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSGPVETYE GVAGVANNGG NPLLEDLNRY YSAGDFGWIM TCTALVLLMV PGVGFFYSGL  60
   61 ARRKSALALI WLSLMSIAIV GFQWFFWGYS LAFSHTGSAY IGNLSNFGLM KTLAQPSVGS 120
  121 GKIPDLLFCL YQGMFAAITP ALAIGACADR GRMLPALVFM FIWTTIVYDP IAYWTWNGNG 180
  181 WSFKMGGLDF AGGTPVHISS GAAALAYSLM LGKRNGYNKV NGLPYRPHNV THVVLGTVFL 240
  241 WVGWFGFNGG SALAANLRAV MACIVTHIAA CVGGLTWVLL DYRLERKWST VGFCSGAIAG 300
  301 LVAITPAAGY VPPWSAFIFG VVGGISCNFA TKLKFLLGID EALDVFAEHG VGGIVGNLLT 360
  361 GIFAADYIAA LDGVSIGDSA IAGGWVNHHY IQLAYQLADS VAGFSYSFVM TCVILFLLNL 420
  421 VPGLSLRVDH HQEDIGLDDD QLGEFAYDYV EVTRSLDVIP GLTAPNSTAG SISGRDPEKQ 480
  481 V