YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28923201, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.70
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPNLRPSLG VASTVIGQRT GLAAVVGIQA VAATSRAFRT CACLSAALSP TAVTSQASRS  60
   61 IIHDNPTFQQ PRAYRRCVAS PTFTPTPTPW RPTTTRLPPI TGPPPWAQQR RSASDWWNRS 120
  121 FNERADPYGV HRRYADPLFT NQDLKRAARH QNTKYLLVFC VAGTVIFYFI NLETVPVSGR 180
  181 TRFNIYSRKL VLEAGELSFR RLLYDLQKQG VAILPDWDWR TQRVKRVMAK LIPFSGMKDE 240
  241 KWEIFVIDDP HKANAFVLPG GKVFVFSGIL NLARTDSQLA TVLGHEIAHN VADHVGERMS 300
  301 QTLGLNILLY SLVVLCGALG LGAIIAQFAG AWALDTAISN PMSRKQESEA DYIGLMMMAE 360
  361 ACYDPREAVT FWEKMDRMSK GEVPEWMSTH PSHSNRIEKI LEWLPEALEK RERSDCRTTS 420
  421 SFADLFRQAL LNGAIEIRQY

Type	Start	End	Confidence
Signal Peptide	1	23	0.73
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	306	0.70
Transmembrane Helix	307	334	0.81
Cytoplasmic	335	440	0.62