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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|85083569
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.49
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPPTKPTSK NPPPQSQTEY QAIAAKFAAA KRAKAAQDAA KARTAGVAKA AGGEAIEKDR  60
   61 VSLADKQRTA LEARRKSNFE ARWLWTVGFW VWLLLIHVAG IAYFTSGFLL TRLMLDEKSV 120
  121 CDAPPTLNTS TNGVVDILPN WKGKGTVDGG CWHPKTFERA VVVVIDALRY DFTVPIKDDA 180
  181 PFHNAFPFMY DTALTSPNNA VLRPFIADPP TTTLQRLKGL TTGTLPTFVD VGSSFAGTAI 240
  241 EEDNLLMQLR DAGKRIVHLG DDTWESLFPG YFQANLSRAY DSFNVWDLHT VDNGVIEHIF 300
  301 PLMKRKGDWD VVVAHLLGVD HAGHRYGPDH PEMAKKLQQM NTFIKDLASN IDDDTLLIVM 360
  361 GDHGMDSKGD HGGESEDEVE AALWMYSPKP VFGRTKPEYV TPPATAKTRP ANQIDLVPTL 420
  421 ALLMGIPIPY NNLGHPIEEA FVGPRGTAWD RLAAAERMAA AGIKRYQTSY FSARGIEQAT 480
  481 TPGSPADLWD KAEALVPKSK VKKGHSWEPV FLAYAEYQRE TLDYSKSLWA RFDVKNMVIG 540
  541 ISIMASSVIA LLVYINKRTE DDDVLVIEDS ELDHAEKSLE LQGITADEGQ SLEKRLFRAA 600
  601 MLGALPGVFG GLLQSYLSGN GDWYRGSAVG ALTSAATVLV ALYDAEGPSF NVLPTTLWGW 660
  661 MAVVFTISQS IGFASNSYTI WEDSIQLFMM TTFGLVTAFS AFRMESLPDR FMTIYHSVLF 720
  721 VLLGRLASFS KLCREEQMPY CTSTYYASAT SSTSAPWQLA IPFIAAIILP SIIKAYLAPS 780
  781 KSYEGLAPTW IGYVFRAGLF FSAIYWVLDA ADNGNWLSSL SSLSSYLPSS ASDTLSSLPP 840
  841 LPDKALKTLS VYTAQMILSL ALVAGSTAFV WAPPCISIIT SALRTPKTAA DPLAAIPGAQ 900
  901 TAQVTVLGYG NAHGARYLLL PLNFFVALFL LTKPMGAGAL ALTLWQSLSL LEILDLLNLP 960
  961 IGSNPIGPVM LALLGQNAFF KTGHQAVLSS IQWDSAFIPL YSIKYPWSPL LVILNTFAGQ1020
 1021 ILATILVPML VLWKSGPKRR GILGSVSRAL GVFVAFYATQ ALATMMWAGH LRRHLMLYRV1080
 1081 FSPRFMTAAV TLLVVDVVAV VVGLTGVRVN MMSVAEVFGW AD

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle