YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28918208, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSRAARLST RVAAPVRARV AAPRVVIPSI AARRSVTTNA ASAQLEKPLP ESETEPFQVT  60
   61 LSDESFETYE LDPPPYTLNV TKKELKQMYY DMVVVRQMEM AADRLYKEKK IRGFCHLSVG 120
  121 QEAVAVGIEH AIERADDVIT SYRCHGFAYM RGGTVRSIIG ELLGRRGGIA YGKGGSMHMF 180
  181 TKGFYGGNGI VGAQVAVGAG LAFAHKYTGR KNASIILYGD GASNQGQVFE SFNMAKLWNL 240
  241 PALFGCENNK YGMGTSAARS SALTDYYKRG QYIPGLKVNG MDVLAVKAAV AYGKQWTNND 300
  301 NGPLVLEYVT YRYGGHSMSD PGTTYRTREE IQRMRSTNDP IAGLKQHILE WGVASEEELK 360
  361 NLDKEARAYV NEEVAAAEAM PPPEANQQIL FEDIYVKGTE PDFIRGRTPD ELFYFKH

Type	Start	End	Confidence
Signal Peptide	1	18	0.61
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	417	0.91