YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28918446, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAECRWWHDK TADAEERTKA KLMGKNIAAL STWSMMGCPA SGILHGFLIF CTKIRQGRMA  60
   61 GSRGNSLFSS GSGAANRAKR RTPLDRRTGH GTGDCTRTTK TRQFSTELNS YYPSMVFTDT 120
  121 ATGPSMAMMA NTTIAAALPP LPAYETRPLP DLLPWISDFW LSLILPHIAY WVVSMFFHII 180
  181 DVYDLFPQYR LHTPEEISQR NLASRYEVAR DVLLEQAIQI GTSAVLNLLD DQQLTGHENY 240
  241 EVAVWATRIR LAQRGLPTIL GFVGLNAGAL SKNIAGSYPL LAGALAGGFY PSLFELDDMA 300
  301 GTAVPAFASW EILLAKAIYW IIIPCIKFWF AAFVLDSWQY LWHRAMHMNK WMYTKWHARH 360
  361 HRLYVPYAYG ALYNHPVEGF VLDTLGAAIA YKCSFMTSRE GMFFFVGSMM KTVDDHCGYA 420
  421 LPWDPLQNIT SNNAAYHDIH HQSWGIKTNF SQPFFTTWDR ILGTMWKGDT SIKYERTRAA 480
  481 AANKKKGAKG EETKAE

Type	Start	End	Confidence
Non-Cytoplasmic	1	28	0.65
Transmembrane Helix	29	51	0.83
Cytoplasmic	52	119	0.70
Transmembrane Helix	120	138	0.68
Non-Cytoplasmic	139	158	0.68
Transmembrane Helix	159	180	0.83
Cytoplasmic	181	257	0.80
Transmembrane Helix	258	292	0.59
Non-Cytoplasmic	293	316	0.65
Transmembrane Helix	317	342	0.79
Cytoplasmic	343	496	0.84