YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46196899, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEKMGAYFL KRLLGLIPVL LGITLLVFLF LQLIPGDPAE ALLGERASAE EIAKLREKLG  60
   61 LNKPLYVQYL TFLGNVLRGD LGTSAVSTIP VAEELKRRWP ATFELALAAT ALAVLLGIPI 120
  121 GILAAVRRNT LWDTLSMSFS LVGVSMPVFW LGLLLVYLFA VNLHWLPTGG RLSTDLSIDF 180
  181 QPLTGFLLLD GLLAGKPHVT WDALRHLVLP AITLGTIPLA IITRITRSAM LEVLSQDYVR 240
  241 TARAKGLAER QVILKHALRN ALLPVVTIVG LQFGTLLGGA ILTETIFSWP GIGSYIYEGI 300
  301 LNRDYPVVQA GVLVVATSFV LINLIVDLSY ALLDPRIQYR

Type	Start	End	Confidence
Cytoplasmic	1	12	0.86
Transmembrane Helix	13	34	0.92
Non-Cytoplasmic	35	104	0.89
Transmembrane Helix	105	126	0.92
Cytoplasmic	127	137	0.70
Transmembrane Helix	138	161	0.87
Non-Cytoplasmic	162	202	0.81
Transmembrane Helix	203	225	0.84
Cytoplasmic	226	260	0.96
Transmembrane Helix	261	283	0.89
Non-Cytoplasmic	284	306	0.88
Transmembrane Helix	307	331	0.85
Cytoplasmic	332	340	0.90