YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46198933, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.90
Transmembrane Helix	12	31	0.91
Non-Cytoplasmic	32	46	0.85
Transmembrane Helix	47	67	0.91
Cytoplasmic	68	76	0.80
Transmembrane Helix	77	96	0.94
Non-Cytoplasmic	97	106	0.75
Transmembrane Helix	107	128	0.91
Cytoplasmic	129	135	0.90
Transmembrane Helix	136	157	0.92
Non-Cytoplasmic	158	164	0.80
Transmembrane Helix	165	183	0.96
Cytoplasmic	184	198	0.85
Transmembrane Helix	199	219	0.93
Non-Cytoplasmic	220	229	0.77
Transmembrane Helix	230	247	0.97
Cytoplasmic	248	265	0.80
Transmembrane Helix	266	287	0.89
Non-Cytoplasmic	288	302	0.75
Transmembrane Helix	303	324	0.88
Cytoplasmic	325	331	0.85
Transmembrane Helix	332	352	0.95
Non-Cytoplasmic	353	358	0.87
Transmembrane Helix	359	381	0.92
Cytoplasmic	382	400	0.92
Transmembrane Helix	401	422	0.86
Non-Cytoplasmic	423	590	0.59
Transmembrane Helix	591	609	0.94
Cytoplasmic	610	622	0.52

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNFTPDAKEV RYTMVGILLG LFLAALDQTI VSTAMPRIVG ELKGAEYYAW VTTSYLLAST  60
   61 VSAPVFGRLT ELFSRKAVLV AAVLLFLLGS ALSGLSQNMV ELVLFRGVQG LGGGALFALA 120
  121 LTTLAALFPP RERGRLAGVF GAMFGLSSAV GPWLGGLLTD HFSWRWVFYV NMPVGAVALW 180
  181 FILRHMPRLS PGKREPFDFL GAFLLAAWAV PLMLAFSWGG STYPWDSPRI LGLFALAAAA 240
  241 FGLWVLVELR VPHPLFDLAV FRIPTFTYAA LASFFYGPAF LGAVAFLPLY LQVVKGVSAS 300
  301 QSGVTVLPLT FGVILGSVGG GQLAARHGRY KGLVLGSALF LLGIFLLFHF LLRVDTPLWL 360
  361 AVFLFFLAGL GLGPAQSLLN IAAQNDVPMN RIGSATSAVQ FMRQIGATMG VAFLGTVLAS 420
  421 ALSDHLKAAF PQGAAGAPVL AQGGEGMALD LDREFARLED LLARALRGDE AAYRALLQDP 480
  481 MVPKAYLQGL SPGGLPARFA ALKEEVRAAL AGDEAARRAL LQDPALPEDL KAFLRAPRGA 540
  541 LGPEAVEAAL AQAEARALEE ATRQAVAGLE AAKARLKEAL SFGITEALRR IFLYSALFTL 600
  601 GALVFVLLLP DRELKGRPAP VE