YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46196313, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.96
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRPPSRWLL LLALGTPALA QGEAASPENP WLWAVLVLLF ALSAFFSASE TAITTLYPWK  60
   61 LRELAESKNG PFRLLSKDIT RFLTTILVGN NLVNIAATAL VTELATRAFG SAGVGVATGA 120
  121 MTFLILFFGE ITPKALAVHH AEAIARLAAW PIYGLSLLFY PLGRFFSLVS GGLLRLLGLE 180
  181 PRGTPLVSEE ELKLILAGAE ESGAIEPQEE EMIHSILELE ETPVREIMTP RVEMVAIEDE 240
  241 ATLEDLLALY REHRYSRVPV YRESVDHIVG VAYVQDLLTY YCEEDLKAFK VASIAHPPYF 300
  301 VPENMDAWSL LKELRRRKVH MAIVVDEFGG TAGLVTLEDV MEEIVGEIYD ESDEPEEHPI 360
  361 RLLPDGAYSI QAQTPIDEVS EALGVELPEG EYDTLSGFLY ALFGRIPSVG ESLEWQGFRF 420
  421 VVESADQRRL ERVRVERVVE RERQGG

Type	Start	End	Confidence
Signal Peptide	1	20	0.96
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	35	0.89
Transmembrane Helix	36	59	0.91
Cytoplasmic	60	78	0.97
Transmembrane Helix	79	101	0.90
Non-Cytoplasmic	102	107	0.83
Transmembrane Helix	108	129	0.92
Cytoplasmic	130	146	0.81
Transmembrane Helix	147	168	0.81
Non-Cytoplasmic	169	446	0.96