YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|32411273, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	162	0.99
Transmembrane Helix	163	183	0.92
Non-Cytoplasmic	184	194	0.78
Transmembrane Helix	195	214	0.94
Cytoplasmic	215	259	0.97
Transmembrane Helix	260	281	0.92
Non-Cytoplasmic	282	311	0.90
Transmembrane Helix	312	342	0.81
Cytoplasmic	343	356	0.90
Transmembrane Helix	357	379	0.88
Non-Cytoplasmic	380	394	0.87
Transmembrane Helix	395	414	0.94
Cytoplasmic	415	423	0.82
Transmembrane Helix	424	444	0.93
Non-Cytoplasmic	445	459	0.75
Transmembrane Helix	460	479	0.85
Cytoplasmic	480	489	0.80
Transmembrane Helix	490	511	0.93
Non-Cytoplasmic	512	525	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAPSDTEGY TGGQGDSPDS PDRNRQRNLV DDHNHNQGQD DGYSQGHVTG TGLHPLHQSQ  60
   61 GRYPRASSRR ASAAPLNYDV PDDYAHLEAS NISPVQNPDE DPITRLDTLE RVRTRDRDYL 120
  121 REQRRKPLPP PQEPESSAED YEREKQAGVV AKRQKVSRLA TELYTISYLI FFSLLGTLAR 180
  181 LGLQALTSAY PQSPIIFPSI WPNFAGCVVM GFLAEDRMLF RPDWGQQQPN PKKDDDDDEE 240
  241 AKDIDPAAAK KAHMALKKTI PLYVGLATGF CGSFTSFSSF IRDIYLALSN DLAAHGSSAA 300
  301 PVSRNGGYSF MALLAVTITT ISLSLSGLFA GAHLAIAIAT LFTRFDLGLP YTFVSRILDR 360
  361 LIVLLGFGCW LGAVLLSIWP PDRHSAQPEK ERWRGTATFA LVFAPLGCLT RFYASAHLNG 420
  421 RLPSFPLGTF VVNMLGTAVL GMAWDLNHVP SLGGVVGCQV LQGVADGFCG CLTTVSTWVS 480
  481 ELAALRRRHA YVYGGASVGG GLALMVVVMG SLRWTEGFGE VKCIS