YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MMM1_NEUCR
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADICPSRSE PTLSFTQGLI LGQLSVVLLL AAFIKFFIFG DPPSPEVVAS IRATDRRSRT  60
   61 LAHKKSILSL RETNALQLVQ NPALNKKHVL RPGPPILTIG SILSKTYYKV DSHQPESLDW 120
  121 FNVLIAQTIA QFRSDAQHDD AILSSLSKAL NGTARPDFLD EIKVTELSLG EDFPIFSNCR 180
  181 IIPVDEDGLS FGTGKAFDAN MATREGARLQ ARMDVDLSDM ITLAVETKLL LNYPKRLSAV 240
  241 LPVALAVSVV RFSGTLSISF IPSNPSNNEP AKMIFTFLDD YRLDFSIRSL LGSRSRLQDV 300
  301 PKIAQLVESR LHRWFDERCV EPRFQEIALP NMWPRKKNTR GGDETISDVE RSMSKAKGVD 360
  361 IAKDVREEAR KEIEAEAHGG ADRVPDSLRY RHRPRADEEF PGAGSMPGSM PGSMP

Type	Start	End	Confidence
Cytoplasmic	1	17	0.68
Transmembrane Helix	18	39	0.83
Non-Cytoplasmic	40	415	0.87