YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COBT_LEPIC
Protein type:	Transmembrane
Type Confidence:	0.68
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPDQLSTKL QNKIDLKTKP PGSLGTLESI ALQIGLIQNT DSPELKNPHI LVFAGDHGLA  60
   61 ESGVSAFPKE VTHQMVFNFL NGGAAINAFC KQNSIRLKVV DSGVDFKFPH DTVSLHPDFI 120
  121 DAKVGFGTKN ILIEPAMTKE QCNQALENGA RISQKSVSEN CNVIGFGEMG IGNTSSASLI 180
  181 TASILKKSLK EVTGKGTGLN DQGFQKKIEI LEKCFEKHKT NLKTAFDVLQ TFGGFEIAMM 240
  241 VGAMIDSVKK GRIILIDGFI ATSAFLIAHK MEPSILKNAV FCHKSVEPGH SYLLEEWNIK 300
  301 PLLDLGLRLG EGTGCAIAFP ILISAVTFLK EMASFESAKV DQKL

Type	Start	End	Confidence
Non-Cytoplasmic	1	308	0.56
Transmembrane Helix	309	329	0.56
Cytoplasmic	330	344	0.51