YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|45602064, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	27	0.58
Transmembrane Helix	28	48	0.85
Non-Cytoplasmic	49	49	0.28
Transmembrane Helix	50	70	0.69
Cytoplasmic	71	74	0.35
Transmembrane Helix	75	92	0.53
Non-Cytoplasmic	93	100	0.66
Transmembrane Helix	101	122	0.90
Cytoplasmic	123	129	0.70
Transmembrane Helix	130	150	0.80
Non-Cytoplasmic	151	180	0.89
Transmembrane Helix	181	201	0.94
Cytoplasmic	202	209	0.89
Transmembrane Helix	210	231	0.88
Non-Cytoplasmic	232	271	0.90
Transmembrane Helix	272	291	0.75
Cytoplasmic	292	310	0.74
Transmembrane Helix	311	333	0.74
Non-Cytoplasmic	334	348	0.58
Transmembrane Helix	349	382	0.69
Cytoplasmic	383	405	0.62
Transmembrane Helix	406	434	0.84
Non-Cytoplasmic	435	750	0.72

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALKPKEHIM NILYSFPRVS WDNLRHDFSA GLVVFLISLP LCIGIGFASG APIVSGLISG  60
   61 IVGGIVISLI SKSPLSVSGP AAGLTVIVFD SIKTLGNFND FLLALCLAGI FQIILGFLKA 120
  121 GILSNFFPSA VVKGMLAAIG VVLILKQIPH AIGYDIDYEG DMGFFQKDRE NTFSEILTAF 180
  181 YRFTPGAIIL FTVALVLILI WEKFKLHEKF IIHGSLVAIV TGVLLNEMFR IFELGIVVSG 240
  241 EHLIQPIQLN GALDLFLDDY SPNFSQWKNQ TIYFIAIKLC LVMSLETLLN LDAIEKIDPQ 300
  301 RRIVSKNREL VAQGTGNLCS AILGGLPITS VIIRSSANLH AGARTRFSSF LHGLLILVSV 360
  361 ILIPVWIAKI PLASLAAVLL VVGYKLTDYK ILQTQYKKGM DQFLPFISTL VGIVFTDILV 420
  421 GIGIGCLFSV FFIMRRNILN PYQFNKKEMA YGVEVKIDLS EDVSFLNKSS MLYKLDKVPD 480
  481 NAHLIIDGSR SKYIDPDVLE IIEDFKIVAR SRNIKLEIID VTSSYEKIQN KPLDLVLQQD 540
  541 YQKLFENNRI WVEEKLSKDP DYFKNLALGQ TPQYLLISCS DSRLSVNEMT GTSAGELFVH 600
  601 RNIANLVIDT DMNLMSVLQY SVEVLKVKHI VVCGHYDCGG VKTAIDGKYH GLIDAWLRHI 660
  661 KQVYRMNRKE LSGILDENEK HERLVELNVR EQVYNLCMTT IVQNAWSRGN DLQLHGWVYD 720
  721 LKQGKILDLN IDIDKDFRDY DIFRYQFETH