YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24195569, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFKAGYLRS SIGRKTLVAA TGLVYFGFVV VHMLGNLQIF LGQEKINAYG QSLRDIAPLL  60
   61 WVARIILIVS FIIHVYYAIK LTIENRQARP VPYSKKNTVQ ATLASRTMAL TGLLIFSFIV 120
  121 YHLLHFTLGV TNPDHFAMTD AKGRHDIYTM VVLGFQNPIV ASSYIFAMLL LATHISHGVA 180
  181 SVFQTLGLNT PYFSGKIKAG AILFALLIFI GNTSIPLSIL LGYVHP

Type	Start	End	Confidence
Cytoplasmic	1	15	0.93
Transmembrane Helix	16	35	0.90
Non-Cytoplasmic	36	59	0.83
Transmembrane Helix	60	79	0.95
Cytoplasmic	80	102	0.92
Transmembrane Helix	103	125	0.87
Non-Cytoplasmic	126	159	0.92
Transmembrane Helix	160	183	0.81
Cytoplasmic	184	199	0.80
Transmembrane Helix	200	222	0.91
Non-Cytoplasmic	223	226	0.77