YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|32410903, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	156	0.97
Transmembrane Helix	157	178	0.89
Non-Cytoplasmic	179	193	0.86
Transmembrane Helix	194	214	0.94
Cytoplasmic	215	222	0.81
Transmembrane Helix	223	243	0.92
Non-Cytoplasmic	244	249	0.75
Transmembrane Helix	250	271	0.90
Cytoplasmic	272	282	0.83
Transmembrane Helix	283	305	0.91
Non-Cytoplasmic	306	313	0.86
Transmembrane Helix	314	334	0.95
Cytoplasmic	335	383	0.95
Transmembrane Helix	384	405	0.94
Non-Cytoplasmic	406	426	0.91
Transmembrane Helix	427	449	0.93
Cytoplasmic	450	471	0.93
Transmembrane Helix	472	493	0.91
Non-Cytoplasmic	494	501	0.74
Transmembrane Helix	502	525	0.83
Cytoplasmic	526	529	0.65
Transmembrane Helix	530	555	0.78
Non-Cytoplasmic	556	564	0.77
Transmembrane Helix	565	585	0.91
Cytoplasmic	586	600	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRSQPPGQA APITNEQEHN INRSSTSGEA ERLSLQRQKS IEQAIDEGHD ADIPSDIGYV  60
   61 LDEQGEKRRK EAIRRNSLAR ARSHASHTSH HHHHDDHDIE KEAAAGKEAS SSHDDPQEDS 120
  121 SGAVTSSSSE EDEANIIWWS ENDPENPYNW PRWQKILNVG LISAQTFIAP LASSIFAPGV 180
  181 PSVMKEFHNS SPELASFVVS VYILGFAAGP LVIAPLSEIY GRLVVYHGCN VCFIAMLIAC 240
  241 AEVPSLNALI AFRFLSGIFG SCPVTNGGGT ISDMITQEKR ATAMALMTMG VLLGPIIAPI 300
  301 IGGVISDSDL GWRWVFWILT IVAGVVALCM VVFGKESYAP VLLQRRVDRL RKETGNDMLR 360
  361 SKLDIGLSPK DYFKRSIVRP LKMLVFSPIC IIFAIYIAIV YGYMYLMFTT ISRVFTNPET 420
  421 YNFGTRIVGL VFLGMGVGSL LGLVFFSVAS NRIMKAKAGP DGNGTCTPED RLTVLPIGAI 480
  481 LLPAGFFIYG WTAQYHVHWI VPILSHVLIG FGNIVIFMAI SMALIDTFTI YAASALAANT 540
  541 VARSVFGAVL PIFGLRMYDT LGLGWGNSLL AFIAVALIPV PFLLIRYGEL LRTRYEIKNL 600
  601