YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85094037
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYDEKPQVDN ISAEQAHAQA QAQLQAQAQA AVAAAHQEAM LNGWHNPMAR IHTGTEPRLP  60
   61 AFGGEFQPGL YRPVKERKFA NPAPLGLCAF ALTTFILSCV NLKARNLTVP NVVVGSALAY 120
  121 GGLIQLLAGM WEMAVGNTFG ATALSSYGGF WISYAILLTP AWNILGADGP YATPEAKAID 180
  181 PEMAASAVGV FLTGWFIFTT ILLLCTLRST IMFFMLFFTL DIAFLMLACG EYANDNGNAL 240
  241 AAGRLTKAGG VFGMLAAFFA WYNAFAGIAD SSNSFFLLPV FHFPWSEKGR ETRMAAKSDR 300
  301 DQAPKHVFPR QCSDRAQMMS DSMTSLPCHF ASDPGY

Type	Start	End	Confidence
Cytoplasmic	1	79	0.90
Transmembrane Helix	80	100	0.85
Non-Cytoplasmic	101	108	0.60
Transmembrane Helix	109	131	0.82
Cytoplasmic	132	138	0.58
Transmembrane Helix	139	164	0.76
Non-Cytoplasmic	165	182	0.77
Transmembrane Helix	183	205	0.88
Cytoplasmic	206	210	0.67
Transmembrane Helix	211	233	0.84
Non-Cytoplasmic	234	247	0.71
Transmembrane Helix	248	281	0.61
Cytoplasmic	282	336	0.84