YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|45438345, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMHSRLKACC VAISESACGR LSSHIPVKQG DALFLAQEII RKKRDGQPLS EEEIRFFING  60
   61 IRDNVVSEGQ IAALAMTIYF HDMSMPERVA LTMAMRDSGT VLNWKSLNLN GPLVDKHSTG 120
  121 GVGDVTSLML GPMVAACGGY VPMISGRGLG HTGGTLDKLE AIPGFDIFPD DNAFRKIIQN 180
  181 VGVAIIGQTS SLAPADKRFY ATRDITATVD SIPLITASIL AKKLAEGLDA LVMDVKVGSG 240
  241 AFMPTYSLSA DLAQAIVGVA NGAGCKTTAL LTDMNQVLAS SAGNGVEVRE AVRFLTGEYR 300
  301 NPRLLEVTMA LCVEMLLSGG LAHDEADARA KLQAVLDNGK AAEVFGRMVA AQKGPADFVE 360
  361 RYDSYLPVAT LSKPVFAEQT GIITAMDTRA LGMAVVALGG GRRRATDPID YSVGLTEMAR 420
  421 LGTRVDGQQP LAVIHANNED DWQQEAEVVR AAITLGNNTP EETPVIYRRI TE

Type	Start	End	Confidence
Signal Peptide	1	19	0.82
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	472	0.99