YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|108813776, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	39	0.71
Transmembrane Helix	40	62	0.81
Cytoplasmic	63	85	0.76
Transmembrane Helix	86	110	0.89
Non-Cytoplasmic	111	124	0.84
Transmembrane Helix	125	147	0.88
Cytoplasmic	148	155	0.75
Transmembrane Helix	156	177	0.88
Non-Cytoplasmic	178	187	0.82
Transmembrane Helix	188	210	0.93
Cytoplasmic	211	239	0.96
Transmembrane Helix	240	260	0.92
Non-Cytoplasmic	261	266	0.87
Transmembrane Helix	267	288	0.92
Cytoplasmic	289	374	0.92
Transmembrane Helix	375	392	0.55
Non-Cytoplasmic	393	412	0.63
Transmembrane Helix	413	434	0.84
Cytoplasmic	435	449	0.65
Transmembrane Helix	450	472	0.70
Non-Cytoplasmic	473	477	0.55
Transmembrane Helix	478	497	0.58
Cytoplasmic	498	504	0.61
Transmembrane Helix	505	528	0.91
Non-Cytoplasmic	529	531	0.64

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMLCQKKVIF SFYQPPIVTD NAPRSCPQTG VTLMLHLFAG LDFHTGLMLV LALLFVLFYE  60
   61 AINGFHDTAN AVATVIYTRA MRSQIAVVMA GVFNFLGVML GGLSVAYAIV HLLPTDLLLN 120
  121 VSSTHGLAMV FSMLLAAIIW NLGTWYFGIP ASSSHTLIGA IIGIGLTNAL MTSTSVVDAL 180
  181 NVPKMIQIFL SLILSPIVGL VIAGLMVFLL RRYWSSTKKQ QRIHLTPAER EKKDGKRKPP 240
  241 FWTRTALILS AIGVSFSHGA NDGQKGIGLI MLVLIGVAPA GFVVNMNATG YDIARTRDAV 300
  301 THVQLYYQQH AEALPHAIAL KPLVPAPETL PGTPAQFHCD TSRAMVAINH AQALLTDLKS 360
  361 YDDLTVDQRS QMRRLLMCVA ETAGAVAKLP ETSAENRRFL NNLRTDLLDT VEYAPTWIIV 420
  421 AVALALSLGT MVGWRRVAVT IGEKIGKKGM TYAQGVSAQM TAAVSIGIAS YTGMPVSTTQ 480
  481 VLSSAVAGTM LVDGGGVQSK TVKSIMLAWV LTLPISIFLS GALYWIALKF I