YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21958273, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRWQCIGTT EIVMMQDLRL ILIVVGAIAI IALLLHGLWT SRKERSSLFR DRPVKRTKQE  60
   61 RVETPIESLD EGVGEVRVRT SHPQEKPSFN HLDDDDDEVP VIQHAETKSA QVKTASRQAP 120
  121 FASVQTDYDD PLLGGLSAEQ PPHDLSRDPL LGKADESYSQ PQHAEPPHVE KPAHQVAPQQ 180
  181 HVESQQEPVA PAPEAKPQKL KETVLVLHVA AHHGGVIGGE VLLQSVLQSG FQFGEMGIFH 240
  241 RHLSPAGSGP VLFSLANMVK PGSFDPDTMS DFSTPGVSMF MMVPSYGDAN QNFKLMLQSA 300
  301 QRIADDVGGV VLDDERRMMT PQKLESYKAR IREVLDANTI A

Type	Start	End	Confidence
Cytoplasmic	1	19	0.87
Transmembrane Helix	20	40	0.96
Non-Cytoplasmic	41	341	0.91