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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|45436370, gi|...
Protein type: Transmembrane
Type Confidence: 0.74
Topology Confidence: 0.67
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYVQEVAFLD HQTSCWLKGY IMYNAFTTLL RPLHWHRMTL LALFISGFVV NPAMADTQYD  60
   61 SLIIRARAGD TAPVLDYLQE ESKAGPLQSG QVDDWLQIAG WAGRDQEVID VYERYQSSMN 120
  121 ISSRGLASAA RAYRNEKRWD QALALWQSSL KKDPTNPDLI SGMIMTQADA GRGGVVLKQA 180
  181 TELAERDPTV QNYMTLSYLN RATDRNYDAL QASSEAVRLA PTSEEVLKNH LEILQRNRIV 240
  241 EPALRLAKEN PNLVSAEHYR QLERDAAAEQ VRMAVLPTRS ETERFDIADK ALADYQNLLT 300
  301 RWGKDPEAQA DYQRARIDRL GALLVRHQTA DLIKEYEAME AEGYKMPDYA RRWAASAYID 360
  361 RRLPEKAAPI LSSLYYSDGK TFRNSDDLLD ADDLYYSLNE SEQLDKAYQF AVNYSEQTPY 420
  421 QVGVYGLPGK EPNDDWIEGQ TLLVQSLVAL NDLPTAQKKL EDLSSTAPAN QNLRIALASI 480
  481 YLARDLPRKA EQELKAVESL APRSLILERA QAETAMALQE WHQMELLTDD VISRSPEDIP 540
  541 SQELDRQRKV HNMYELRVSG NRVISSNSPV SGNKDYGVET LLYSPPIAEN WRVFGGGSYN 600
  601 NGQFEEGTGI SRILRLGGEW TSRDHWVEGE ISNQNYGNGN KVGARLSTWY DLNDHWRVGG 660
  661 QVERLAKDTP LRALKNKVTT NSASAYVFWK ADDKRDAELS VTPSRFSDGN NRWEYEFNGR 720
  721 QRIWTGPYLT ADFNLGLAAS QNSKEDVIYY NPKRDFAYVP AVTLNHIMYR RYKTIWSQQV 780
  781 QLGVGGYWEK NYGNGLVTTA GYGQRVQWND VIDTGVAVVY DKRPYDGKRE HDVTLSFDLN 840
  841 YRF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle