YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|229701189, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.65
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAAAPTSTT LASTTLASTT TQQTATTGFA ASHPGSNSQL QPSSQLQPQS SAAPPAMPAG  60
   61 GVLTQVGSAL GGILLLILFV AWLVRRLGFA PQARNNKLLN VRASCQVGQR ERVVIVEVDD 120
  121 TWLVLGVTAQ QVTPLHTLAR PVVEAPRQAD GIRSTSNAQA ADFRQLLNKI LKHPEKSA

Type	Start	End	Confidence
Signal Peptide	1	30	0.62
N-region	1	21
H-region	22	27
C-region	28	30
Cleavage Site	30	31
Non-Cytoplasmic	31	61	0.91
Transmembrane Helix	62	84	0.85
Cytoplasmic	85	178	0.88