YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|22126533, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYDDCVKSPR TISMRNMMSL CWQYLRAFTI IYLCLWAGKA LALLLPIVIP GSIIGMLILF  60
   61 VLLTLQILPS PWVKPSCQLL IRYMALLFVP IGVGVMQYYE QLTKQFGPIV VSCFISTLIV 120
  121 MLVVAYSSHY VHRDRKVISP STPTEGEK

Type	Start	End	Confidence
Cytoplasmic	1	19	0.96
Transmembrane Helix	20	40	0.89
Non-Cytoplasmic	41	46	0.64
Transmembrane Helix	47	68	0.91
Cytoplasmic	69	78	0.88
Transmembrane Helix	79	99	0.94
Non-Cytoplasmic	100	105	0.90
Transmembrane Helix	106	128	0.91
Cytoplasmic	129	148	0.95