YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21957599, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTAARSEIP PVIWQTRRRY NMGSGWHEWP LMVFTVLGQC VVGGFIVLGL ALIFGGLSRG  60
   61 QQQRVHRSMF VLWVLMALAF IASTLHLGSP MRAFNSLNRI GESALSNEIA AGSLFFAVAG 120
  121 FYWLLAVLDK MPAALGKIWL VVAMVLGVIF VYAMCRVYSI NTVPTWDSIY TPLGFVLTTL 180
  181 IGGPLLGYLL LQLADVNGRA MLQLPMISVL ALIISVASVI MQAASLPLIY SSVQQASALI 240
  241 PDYGSLMVWR LVLLVLGLGC WICPLIRGRR PMTLVMVLGT LLVIAGELIG RGVFYGLHMT 300
  301 VGMAVGG

Type	Start	End	Confidence
Non-Cytoplasmic	1	31	0.97
Transmembrane Helix	32	56	0.91
Cytoplasmic	57	68	0.88
Transmembrane Helix	69	88	0.95
Non-Cytoplasmic	89	108	0.85
Transmembrane Helix	109	127	0.95
Cytoplasmic	128	137	0.79
Transmembrane Helix	138	160	0.87
Non-Cytoplasmic	161	168	0.95
Transmembrane Helix	169	191	0.90
Cytoplasmic	192	203	0.82
Transmembrane Helix	204	226	0.88
Non-Cytoplasmic	227	245	0.89
Transmembrane Helix	246	265	0.95
Cytoplasmic	266	273	0.82
Transmembrane Helix	274	295	0.92
Non-Cytoplasmic	296	307	0.90