YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39574484, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.38
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSEVHMPKK VVIVGGGFAG LKAARALGNN EDVSVTLIDR RNYHLFQPLL YQVATAGLSP  60
   61 AEISGPIRGI LSKYKNVSVF LDNLENVDLT NKKIQVQDRS LEYDYLILAC GAKHSYFAHP 120
  121 EWEENAPGLK TLEQATEIRR RLLMAFERAE KETDPEKQKQ QLTFVIVGAG PTGVELAGTI 180
  181 GEISRHTLTK DFRHIDPSRT RVILIEAGPR ILAAFHPDLS RKAAADLEDL GVQIWTNTRV 240
  241 TDVKSDSVVL GDEVIKAATI LWAAGVQPSS INKTLGVPLD RAGRVIIEKD LSLKEHPEVF 300
  301 VLGDQACYLT DKGQALPGLA SVAMQQGTHA ANQILREIEG KPRLEFKYLD KGQMATIGRR 360
  361 KAIAQISNLK FSGFFAWILW LFIHVYYLIG FKNKVFVIWQ WAYAYFTFKR GARLIVDKEW 420
  421 RSKPKPPVS

Type	Start	End	Confidence
Signal Peptide	1	26	0.41
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	372	0.65
Transmembrane Helix	373	391	0.85
Cytoplasmic	392	429	0.63