YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|28921687, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.92
Topology Confidence: 0.82
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPSFPSSFL LSLLSLLCFS PYTAIANASS SPADSISNSR SDYHEQLILR PLPLSTLLAS  60
   61 FNFRSNTSLS AFEAHNFRFF PRSLGQILEH AGTRELHLRF SLGRWDAESW GARPWNGARE 120
  121 GGTGVEMWAW LEADTDEEAD RKWLTLTNAL SGLFCASLNF IDSTRTTRPV MSFQPEGNHI 180
  181 DANATNMHLL YGVLPHEVVC TENLTPFLKL LPCKGKAGIA SLLDGHKLFD SSWQTMAIDI 240
  241 RPVCPEDGEC VLQIEQSIDM VLDIDRSKRP RDNPIPRPPP AHEMKCNTSK PYHAHDTCFP 300
  301 TDSAANQDWS LSQIFGKPIK GTCPLTDPNV SPVCIQVPDS RIVFASEGAV EKKNPDQTSR 360
  361 CFDFPAENDF EIFLPAPEAE DGSVVIEHVV KPETPLLYAE RSFTGHGQER GGVQTILRNP 420
  421 SPDQEVEFIY MESLPWFMRI YLHTISARVD GQPGKADSLI QEVYYRPAVD RARGTQLEVR 480
  481 MTVPPASTVF LTYDFEKSIL RYTEYPPDAN RGFDVAAAVI TILNRDNKSG GNGRNSRFAA 540
  541 YNLRTTTLLC NLPTPDFSMP YNVIIFTSTA IALAFGGMFN ILVRRFVAAN EGPESGLKKG 600
  601 VNKLKAKVAG FLKKGKKESA PAVAAEEEKK ME

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle