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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|28922019, gi|...
Protein type: Transmembrane
Type Confidence: 0.97
Topology Confidence: 0.53
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDHWQQGPVP VLDRPPMLRS RPPVLEPQLT TCASPLFPSA RPDSIDLTAN REPPQIQKPG  60
   61 EDGRGAHSQP MTLGYDSREP FMGACYLRLG LRAESKPYTN DHHHHQFRPS SSSSSSSSSF 120
  121 SSFSSPSPSS SSSSPLYLRL LLIHGCIHRS AISIAPGILA RPPLASDLLQ IERSVGDSRC 180
  181 RRISSKSFQP SPSSSSSPPT TAIDPPWLSH MSAPQPQRSG DALNSHPSTP SNQPKGILYS 240
  241 NDGTASNPNP THASFSPATL SSTAPSATSA AKRRSTILVH QKSPLLLATP PQITRALAYS 300
  301 HPFLLPLNTL AGLITWTTRD PWESFLMVAV FWAAVLYGDI IVRVAGPVVL VLLLIGGMYG 360
  361 RRYSPLSSSG WTEPGVAAGD MAALAGTDGK GSVRGKKAPK SKNLSVDGLP DNKNGKANGG 420
  421 LGGGVGASAG GGGQLRNQGS VSEVTNTRHQ KTLDEIVETL KEFTARCNIL LEPMLELTDF 480
  481 LSTQRTPTSA TTKPALTTLF IRILLCTPFW FLELVTGLQF EKPVKVSPAE KSGVASSAAS 540
  541 TASGSSANKK TFANIKSTKA YNAQESELTK ALRRARGGHD TGVRFTFIIY ENQRRWVGLG 600
  601 WTTSLFAYER PAWTDEHNNA VPPRDQFELP EVEDGSNMRW RWVEGSRWRV DGVPDEAVMP 660
  661 GEDADGKEWD YDSPGGRMGW VYYDNKTQWQ NGRRGQDGWG RWTRRRKWYR DAELVEADDA 720
  721 LIEELAEDAV VDQQGNNYTV NGSANGNSSA DSVTPTATPA PGPGIGARAQ PRSLLSDQLA 780
  781 ASGEIASPST AVPRKTSIKL KKSTPESAVD SLARIQAQDM TKSRMDMKDK LRKDKDAETE 840
  841 GGDEAASVVS TSSTSRSHRF SSALFGKSPT SGASSAVTIR GGRGSSTGGQ QRRNFTDTST 900
  901 APTTTGSPSA SSSGGGGGGG GSCAGHEGRG QSPSTTPYFS SHSLFVPSSQ SRSSSISRKT 960
  961 ISNNSGNNNS YARSRRSSHS NAVSSSNTAT PTTATARGSS PAPQSTLMAA KTNEEDEVVS1020
 1021 SFGTQTRLAL QDAGKDAGSW GFGDEVRMGL E

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle