YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42520409, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSEFEEMLK EILQEINDQG FNKDNIIDKI KDKLQEKDPR VYNGWKDNKF DIDHLFLPGI  60
   61 MLRMIAKDTK LTGFFIEYER TLLYVAAEHG HIQIVENLLD NGAKTGIKNG YCKEAPLHVA 120
  121 AKHGHIRIVE ILSKKEADID LKNRYGETPL HYAAKYGHTQ VLENLLGRST NVNVQSEVGR 180
  181 TPLHDAANNG HIEVVKHLIK KGADVNVQSK VGRTPLHNAA KHGHTQVVEV LLKKGADVNI 240
  241 QDRGGRTPLH YAVQRRYPKL AKLLLNDGAD PSFIHRSKAI TAGVAVGILA AIVTPLALVY 300
  301 ATALPALAII GITVASCTDS WWNFLWGCV

Type	Start	End	Confidence
Cytoplasmic	1	278	0.87
Transmembrane Helix	279	299	0.88
Non-Cytoplasmic	300	305	0.49
Transmembrane Helix	306	325	0.79
Cytoplasmic	326	329	0.59