YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42520054, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKSEKLTKD KKLASDILKE VADTNNNDSN KVTLFDIKTA LHERGFGILI IIFSLPLSVP  60
   61 IPVPPGYTTI LSIPLILFSL QLLFGFDSPW MPSWLERRSF QRSTLALVVE KTSPVLEKIE 120
  121 KFMKPRLSFI FYGPGEKILA FMMLLCAIII ALPLPFTHFL PAIGTTLISL SIMSKDGFLS 180
  181 ILGVLVSLCA LLLTLVVIVK GPQLITGALS LLKSFTTL

Type	Start	End	Confidence
Cytoplasmic	1	44	0.94
Transmembrane Helix	45	63	0.90
Non-Cytoplasmic	64	69	0.70
Transmembrane Helix	70	91	0.88
Cytoplasmic	92	137	0.90
Transmembrane Helix	138	160	0.87
Non-Cytoplasmic	161	177	0.82
Transmembrane Helix	178	199	0.94
Cytoplasmic	200	218	0.86