YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42409790, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKNDKLTKS DKLASDILKE VADTNNNDSD KVTLFDIKTA LHERGFGILI IIFSLPLSVP  60
   61 IPVPPGYTTI LSIPLILFSL QLLFGFDSPW MPHWLERRSF QRSTLAFVVE KTSPALKKIE 120
  121 KFMKPRMSFI FYGPGEKILA FVMLLSALSI ALPLPLTNFI PAIGTTLISL GIMSKDGFLS 180
  181 ILGVLISLCG LLLTLVVVVK GPQLIIGAFS FLKSFVYG

Type	Start	End	Confidence
Cytoplasmic	1	44	0.95
Transmembrane Helix	45	63	0.90
Non-Cytoplasmic	64	69	0.71
Transmembrane Helix	70	91	0.88
Cytoplasmic	92	132	0.90
Transmembrane Helix	133	160	0.75
Non-Cytoplasmic	161	177	0.62
Transmembrane Helix	178	199	0.91
Cytoplasmic	200	218	0.66