YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85110407
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	126	0.89
Transmembrane Helix	127	144	0.78
Non-Cytoplasmic	145	161	0.82
Transmembrane Helix	162	184	0.91
Cytoplasmic	185	204	0.92
Transmembrane Helix	205	224	0.92
Non-Cytoplasmic	225	231	0.85
Transmembrane Helix	232	254	0.87
Cytoplasmic	255	260	0.96
Transmembrane Helix	261	282	0.90
Non-Cytoplasmic	283	288	0.78
Transmembrane Helix	289	308	0.94
Cytoplasmic	309	337	0.95
Transmembrane Helix	338	356	0.97
Non-Cytoplasmic	357	397	0.93
Transmembrane Helix	398	422	0.81
Cytoplasmic	423	431	0.74
Transmembrane Helix	432	457	0.67
Non-Cytoplasmic	458	595	0.79

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQYTASTGS SLRASPNLRQ HHADTSAAPD TTEKFPDFDT SQTTNGYPSG NGRSTNAGSN  60
   61 APSDQWRPRR ESKVTWAPRD SPGPVNAYSH GRGHSRQTSI SNAIHRMRSG SMSQNAHEIA 120
  121 EALRAPVSYK LIGLCMMWYW SSALTNTSSK SILTTFDKPA TLTLIQFAFV CSYCLLASWL 180
  181 ASTFPKLRTA VPALKHPIRK PSRDVIVTTL PLAAFQIFGH LLSSSATSKI PVSLVHTIKG 240
  241 LSPLFTVLAY RLIFDIRYPR ATYYSLVPLT IGVMLACSGK HSFGEGQFLG ILYALIATII 300
  301 FVTQNIFSKR LFNEAARAEQ EDGHSNGHRS KKLDKLNLLC YSSGMAFILT GPIWLWSEGF 360
  361 SIIGDFLWDG SVDLSETPNS FDHGRLTLEF IFNGTFHFGQ NILAFVLLSM VSPVTYSVAS 420
  421 LLKRVFVIII AIIWFRSPTT NVQAVGIALT FLGLYLYDRS QEKNKADQRA RSLSRSKMHE 480
  481 SILPLNTKQT TETSSQYQPS SSLNTQIGGY GYMPSIQPTT SSADLGANKK DDGPNPSSVS 540
  541 TTAGGGRQRG ASMAKANGGW LPPGTRQEHT WRVGDGRGQN GGAEVSGPAG VAVMS