YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42784682, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.76
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKKIGLLAM VIALMAIATG CSEVNQPITP KSTGIWNEYF VYPLSQLITY FANLFGSNYG  60
   61 LAIVVTTLII RFALLPLMIK QTKSTKAMQS LQPEMVKLKE KYSSKDQATQ QKLQQEMMQL 120
  121 YQKNGVNPLA GCLPIFIQMP ILFAFYHAIM RTAEIKQHSF LWFDLGHADP YYILPIVAAI 180
  181 TTFIQQKLAM AGTAGQNPQM AMMIWLMPIM ILIFAINFPA ALSLYWVVGN IFGIAQMYFI 240
  241 KGPEIKASKA EGSGK

Type	Start	End	Confidence
Signal Peptide	1	20	0.76
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	54	0.84
Transmembrane Helix	55	75	0.87
Cytoplasmic	76	125	0.95
Transmembrane Helix	126	149	0.88
Non-Cytoplasmic	150	169	0.88
Transmembrane Helix	170	189	0.87
Cytoplasmic	190	200	0.83
Transmembrane Helix	201	229	0.80
Non-Cytoplasmic	230	255	0.61