YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42740335, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.91
Transmembrane Helix	8	29	0.91
Non-Cytoplasmic	30	48	0.96
Transmembrane Helix	49	70	0.92
Cytoplasmic	71	87	0.91
Transmembrane Helix	88	110	0.92
Non-Cytoplasmic	111	141	0.96
Transmembrane Helix	142	161	0.93
Cytoplasmic	162	185	0.93
Transmembrane Helix	186	209	0.87
Non-Cytoplasmic	210	225	0.85
Transmembrane Helix	226	248	0.85
Cytoplasmic	249	257	0.82
Transmembrane Helix	258	279	0.88
Non-Cytoplasmic	280	316	0.95
Transmembrane Helix	317	337	0.91
Cytoplasmic	338	345	0.89
Transmembrane Helix	346	367	0.92
Non-Cytoplasmic	368	402	0.93
Transmembrane Helix	403	428	0.83
Cytoplasmic	429	444	0.83
Transmembrane Helix	445	466	0.90
Non-Cytoplasmic	467	471	0.84
Transmembrane Helix	472	492	0.95
Cytoplasmic	493	505	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKLTKTFIV SLTLCIAFTI WGIIPESIIG KGSLGNVTTA IQTALVSKFG WFYIISVSII  60
   61 LGVSIFLIVS KYGSIRLGKD DDEPDYSYMT WFAMLFSAGM GIGLVFWGVA EPLNHLYAPP 120
  121 FGEGATEESA RLALRFSFFH WGLHPWGLYA FVALCIAYFT FRKGKASTIS ATVGPLFKGG 180
  181 DHGRIAHLFD VLAVFATVFG VATSLGLGAK QIAGGVSYLT SIPNSLTTQL VIIAIVTVLF 240
  241 MLSAQTGLDK GIKYLSNTNI IFAFALMIIV LFAGPTNFIM NYFTSTIGSY IQELPSMSFR 300
  301 LSPLDEGGNQ WIQSWTIFYW AWWIAWSPFV GTFIARVSRG RTIREFVIGV LLVPTIIGAL 360
  361 WFSVFGGTGI HMELFGDAHI FEKIKEMGTE VGLFAMFDQM GSFGSALSVL AILLISTFFI 420
  421 TSADSATFVL GMLTTHGSLN PPNRIKMIWG IVLAALASIL LYVGGLEALQ TAAIIAAFPF 480
  481 VFVIFFMMAA LFKELQKEGR MKRHK