YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42740302, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	28	0.96
Transmembrane Helix	29	50	0.93
Non-Cytoplasmic	51	67	0.92
Transmembrane Helix	68	90	0.91
Cytoplasmic	91	99	0.81
Transmembrane Helix	100	122	0.89
Non-Cytoplasmic	123	139	0.88
Transmembrane Helix	140	164	0.85
Cytoplasmic	165	179	0.97
Transmembrane Helix	180	204	0.86
Non-Cytoplasmic	205	222	0.89
Transmembrane Helix	223	244	0.85
Cytoplasmic	245	246	0.57
Transmembrane Helix	247	267	0.84
Non-Cytoplasmic	268	290	0.86
Transmembrane Helix	291	312	0.94
Cytoplasmic	313	322	0.75
Transmembrane Helix	323	342	0.60
Non-Cytoplasmic	343	346	0.52
Transmembrane Helix	347	367	0.89
Cytoplasmic	368	374	0.48
Transmembrane Helix	375	393	0.65
Non-Cytoplasmic	394	399	0.66
Transmembrane Helix	400	419	0.92
Cytoplasmic	420	433	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRFLEKYVM PVAGKVAEQR HLLAIRDGLV LTMPFLIIGS IFLIISTLPI PGYSEFMASL  60
   61 FGKNWNVALG YPVSATFNIM ALIAVFGIAY RLGEYYKVDA LASGALSLVT FLLATPFQVA 120
  121 YIMPGTKESI LVDGVIPAAL MGSQGLFVAM IIAIISTEIY RFLVQKKMII KMPETVPPAV 180
  181 TRSFAALIPG FIVVTVVWII RLIFEHTTFG SIHNVVGKLL QEPLSILGAS LWGAVIAVIL 240
  241 VHVLWACGIH GATIVGGVMS PIWLSLMDQN RIAFQAGQDV PNTITAQFFD LWIYMGGSGA 300
  301 TLALVVGMLL FARSQQLKSL GRLSIAPGIF NINEMVTFGM PIVMNPLLLI PFIVVPVVLT 360
  361 IVSYFAMEWG LVARPSGAAV TWTTPILFSG YLGSGGKISG VILQLVNFAL AFVIYLPFLK 420
  421 IWDKQKIAEE KGE