YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42784246, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	13	0.70
Transmembrane Helix	14	33	0.94
Cytoplasmic	34	72	0.68
Transmembrane Helix	73	96	0.67
Non-Cytoplasmic	97	101	0.57
Transmembrane Helix	102	126	0.78
Cytoplasmic	127	149	0.92
Transmembrane Helix	150	170	0.93
Non-Cytoplasmic	171	187	0.90
Transmembrane Helix	188	206	0.95
Cytoplasmic	207	215	0.78
Transmembrane Helix	216	239	0.88
Non-Cytoplasmic	240	249	0.72
Transmembrane Helix	250	269	0.91
Cytoplasmic	270	303	0.89
Transmembrane Helix	304	324	0.91
Non-Cytoplasmic	325	348	0.88
Transmembrane Helix	349	372	0.89
Cytoplasmic	373	386	0.95
Transmembrane Helix	387	409	0.91
Non-Cytoplasmic	410	414	0.86
Transmembrane Helix	415	437	0.91
Cytoplasmic	438	479	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFLAKVIGD INNVLWSYII IAMLIGLGLY FSFRVKFVQV RYFGEMIXLL GDGASSKTRK  60
   61 AQKEKSGVSS FQAFCMSTAS RVGTGNLAGV AIAISAGGPG AVFWMWLIAV IGGASAFVES 120
  121 TLAQIYKVKD GNTFRGGPAY YMEKGLNKRW LGAIFSVLIT VSFGLIFNAV QSNTVAAAFD 180
  181 GAFKTDSRLV GLVMAGLLAV IIFGGVKRIA RAVEMIVPVM AIIYVAVALF VVVTNITAIP 240
  241 YVFKEIFLHA FGIKEVVGGG LGAAILLGVK RGLFSNEAGM GSAPNAAATA NVTHPVKQGF 300
  301 IQTLGVFTDT LLICSCTAFI ILLSDVHNAA DLNGIQLTQQ ALSQHIGPWA SIFVAVAIFL 360
  361 FAFSSLVGNY YYGETNIEFL NGSKVLLTAY RIAVLGMVML GSVATIQIVW DVADLFMGIM 420
  421 AVINLVAIVF LSKYAFAALS DYVKQKKQGK DPVFYANSIP GLKNTECWEE QVADKEKAV